2011

 

Campbell, V., G. Murphy, and T.N. Romanuk. In press.
Experimental design and the outcome and interpretation of diversity-stability relations.
Oikos.

Digel, C., J.O. Riede, and U. Brose. 2011.
Body sizes, cumulative and allometric degree distributions across natural food webs.
Oikos 120:503-509.
doi: 10.1111/j.1600-0706.2010.18862.x

Lotze, H.K., M. Coll, and, J.A. Dunne. In press.
Historical changes in marine resources, food-web structure and ecosystem functioning in the Adriatic Sea, Mediterranean.
Ecoystems 14:198-222.
doi: 10.1007/s10021-010-9404-8

Rall, B.C., G. Kalinkat, D. Ott, O. Vucic-Pestic, and U. Brose. 2011.
Taxonomic versus allometric constraints on non-linear interaction strengths.
Oikos 120:483-492.
doi: 10.1111/j.1600-0706.2010.18860.x

Smith, M.J., H. Benitez-Diaz, M.A. Clmenete-Munoz, J. Donaldson, J.M. Hutton, H.N. McGough, R.A. Medillin, D.H.W. Morgan, C. O’Criodain, T.E.E. Oldfield, U. Schippmann, and R.J. Williams. 2011.
Assessing the impacts of international trade on CITES-listed species: Current practices and opportunities for scientific research.
Biological Conservation 144:82-91.

Thierry, A., O.L. Petchey, A.P. Beckerman, P.H. Warren, and R.J. Williams. 2011.
The consequences of size dependent foraging for food web topology.
Oikos 120:493-502.
doi: 10.1111/j.1600-0706.2010.18861.x

Williams, R.J. 2011.
Biology, methodology or chance? The degree distributions of bipartite ecological networks.
PLoS ONE 6(3): e17645.
doi:10.1371/journal.pone.0017645

2010

 

Brose, U.  2010.
Body-mass constraints on foraging behaviour determine population and food-web dynamics.
Functional Ecology 24:28-34.

Brose, U. 2010.
Improving nature conservancy strategies by ecological network theory.
Basic and Applied Ecology 11:1-5.

Hegland, S.J., J.A. Dunne, A Nielsen, and J. Memmott. 2010.
How to monitor an ecological community cost-efficiently: The example of plant-pollinator networks.
Biological Conservation 143:2092-2101.

Lafferty, K.D., and J.A. Dunne. 2010.
Stochastic ecological network occupancy (SENO) models, a new tool for analyzing ecological networks across spatial scales.
Theoretical Ecology 3:123-135.
doi: 10.1007/s12080-010-0082-0

Puder, A., and I. Yoon. 2010.
Smartphone cross-compilation framework for multiplayer online games.
Second International Conference on Mobile, Hybrid, and On-Line Learning, 87-92.

Rall, B.J., O. Vucic-Pestic, R.B. Ehnes, M. Emmerson, and U. Brose. 2010.
Temperature, predator-prey interaction strength and population stability.
Global Change Biology 16:2145-2157.
doi: 10.1111/j.1365-2486.2009.02124.x

Romanuk, TN., A. Hayward, and J.A. Hutchings. 2010.
Trophic level scales positively with body size in fishes.
Global Ecology and Biogeography, first published online 17 August 2010.
doi: 10.1111/j.1466-8238.2010.00579.x

Romanuk, TN., and C.D. Levings. 2010.
Reciprocal subsidies and food web pathways leading to chum salmon fry in a temperate marine-terrestrial ecotone.
PLoS ONE 5:e10073.
doi: 10.1371/journal.pone.0010073

Romanuk, T.N., R.J. Vogt, A. Young, C. Tuck, and M.W. Carscallen. 2010.
Maintenance of positive diversity-stability relations along a gradient of environmental stress.
PLoS ONE 5:e10378.
doi: 10.1371/journal.pone.0010378

Srinivasan, U.T. 2010.
Economics of climate change: risk and responsibility by world region.
Climate Policy 10:298-316.
doi: 10.3763/cpol.2009.0652

Srinivasan, U.T., W.W.L.Cheung, R. Watson, and U.R.Sumaila. 2010.
Food security implications of global marine catch losses due to overfishing. (Supp. Mat.)
Journal of Bioeconomics, first published online 17 August 2010.
doi: 10.1007/s10818-010-9090-9

Valdovinos, F.S., R. Ramos-Jiliberto, L. Garay-Narváez, P. Urbani, and J.A. Dunne. 2010.
Consequences of adaptive behavior for the structure and dynamics of food webs.
Ecology Letters 13:1546-1559.
(Published Early View 6 Oct. 2010)
doi: 10.1111/j.1461-0248.2010.01535.x

Vucic-Pestic, O., B.C. Rall, G. Kalinkat, and U. Brose.  2010.
Allometric functional response model: body masses constrain interaction strengths.
Journal of Animal Ecology 79:249-256.

Williams, R.J. 2010.
Simple MaxEnt models explain food web degree distributions. (Supplementary Information)
Theoretical Ecology 3:45-52.
(Published Online First 9 May 2009)
doi: 10.1007/s12080-009-0052-6

Williams, R.J., A. Anandanadesan, and D. Purves. 2010.
The probabilistic niche model reveals the niche structure and role of body size in a complex food web.
PLoS One 5:e12092.
doi: 10.1371/journal.pone.0012092

Wood, S.A., S.A. Lilley, D.R. Schiel, and J.B. Shurin. 2010.
Organismal traits are more important than environment for species interactions in the intertidal zone.
Ecology Letters 13:1160-1171.

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2009

 

Belgrano, A., J.A. Dunne, and J. Bascompte. 2009.
Marine food webs
Pages 596-603 in Encyclopedia of Ocean Sciences, 2nd Edition. J.H. Steele, S.A. Thorpe, and K.K. Turekian, eds., Academic Press.
doi: 10.1016/B978-012374473-9.00780-3

Berlow, E.L., J.A. Dunne, N.D. Martinez, P.B. Stark, R.J. Williams, and U. Brose.  2009.
Simple prediction of interaction strengths in complex food webs. (Supporting Information and Appendix)
Proceedings of the National Academy of Sciences, USA 106:187-191.

Brose, U., and J.A. Dunne.  2009.
Modelling the dynamics of complex food webs.
Pages 37-44 in Community Ecology: Processes, Models, and Applications. H. Verhoef and P. Morin, eds. Oxford University Press.

Dunne, J.A.  2009.
Food webs.
Pages 3661-3682 in Encyclopedia of Complexity and Systems Science, ed. R.A. Meyers.  Springer, New York.
doi: 10.1007/978-0-387-30440-3_216

Dunne, J.A.  2009.
Book Review- Human Impacts on Ancient Marine Ecosystems: A Global Perspective, eds. T.C. Rick and J.M. Erlandson
The Quarterly Review of Biology 84:190-191.
doi: 10.1086/603471

Dunne, J.A., and R.J. Williams.  2009.
Cascading extinctions and community collapse in model food webs.
Philosophical Transactions of the Royal Society B 364:1711-1723.

Maschner, H.D.G., M.W. Betts, J. Cornell, J.A. Dunne, B. Finney, N. Huntly, J.W. Jordan, N. Misarti, K.L. Reedy-Maschner, R. Rusself, A. Tews, S. Wood, B. Benson.  2009.
An introduction to the biocomplexity of Sanak Island, Western Gulf of Alaska. 
Pacific Science 63:673-709.

Romanuk, T.N., B.E. Beisner, A. Hayward. L.J. Jackson, J.R. Post, and E. McCauley.  2009.
Processes governming riverine fish species richness are scale-independent.
Community Ecology 10:17-24.

Romanuk, T.N., R.J. Vogt, and J. Kolasa.  2009.
Ecological realism and mechanisms by which diversity begets stability.
Oikos 118:819-828. 
doi: 10.1111/j.1600-0706.2008.17273.x

Romanuk, T.N., Y. Zhou, U. Brose, E.L. Berlow, R.J. Williams, and N.D. Martinez.  2009.
Predicting invasion success in complex ecological networks. (Supplementary Material A and Supplementary Material B)
Philosophical Transactions of the Royal Society B 364:1743-1754.

Vermaat, J.E., J.A. Dunne, and A.J. Gilbert.  2009.
Major dimensions in food-web structure properties.
Ecology 90:278-282.

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2008

 

Berlow, E.L., U. Brose, and N.D. Martinez.  2008.
The "Goldilocks factor" in food webs.
Proceedings of the National Academy of Sciences, USA 105:4079-4080.

Brose, U.  2008.
Complex food webs prevent competitve exclusion among producer species.
Proceedings of the Royal Society B 275:2419-2536.
doi: 10.1098/rspb.2008.0718

Brose, U, R.B. Ehnes, B.C. Rall, O. Vucic-Pestic, E.L. Berlow, S. Scheu.  2008.
Foraging theory predicts predator-prey energy fluxes.
Journal of Animal Ecology 77:1072-1078.

Chen, J., I. Yoon, and W. Bethel. 2008.
Interactive 3D visualization on the WWW via structured, pre-rendered multi-resolution imagery.
IEEE Transactions on Visualizations and Computer Graphics 14:302-312.

Coll, M., H.K. Lotze, and T.N. Romanuk. 2008.
Structural degradation in Mediterranean Sea food webs: testing ecological hypotheses using stochastic and mass-balance modelling.
Ecosystems 11:939-960.
doi: 10.1007/s10021-008-9171-y

Darrouzet-Nardi, A., C.M. D'Antonio, and E.L. Berlow.  2008.
Effects of young invading Artemisia rothrockii shrubs on soil water, soil nitrogen cycling, and resident herbs.
Journal of Vegetation Science 19: 23-30.

Dunne, J.A., R.J. Williams, N.D. Martinez, R.A. Wood, and D.E. Erwin. 2008.
Compilation and network analyses of Cambrian food webs.
PLoS Biology 6:693-708.
doi: 10.1371/journal.pbio.0060102

Lafferty, K.D., S. Allesina, M. Arim, C.J. Briggs, G. DeLeo, A. Dobson, J.A. Dunne, P.T.J. Johnson, A.M. Kuris, D.J. Marcogliese, N.D. Martinez, J. Memmott, P.A. Marquet, J.P. McLaughlin, E.A. Mordecai, M. Pascual, R. Poulin, and D.W. Thieltges. 2008.
Parasites in food webs: the ultimate missing links.
Ecology Letters 11:533-546.

Otto, S.B., E.L. Berlow, N.E. Rand, J. Smiley, and U. Brose.  2008.
Predator diversity and identity drive interaction strength and trophic cascades in a food web.
Ecology 89:134-144.

Piechnik, D.A., S.P. Lawler, and N.D. Martinez.  2008.
Food-web assembly during a classic biogeographic study: species' "trophic breadth" corresponds to colonization order. 
Oikos 117:665-674.

Rall, B.C., C. Guill, and U. Brose. 2008.
Food-web connectance and predator interference dampen the paradox of enrichment.
Oikos 117:202-213.

Srinivasan, U.T., S.P. Carey, E. Hallstein, P.A.T. Higgins, A.C. Kerr, L.E. Koteen, A.B. Smith, R. Watson, J. Harte, and R.B. Norgaard.  2008.
The debt of nations and the distribution of ecological impacts from human activities. (Supporting Information)
Proceedings of the National Academy of Sciences, USA 105:1768-1773.

Sutherland, W.J., M.J. Bailey, I.P. Bainbridge, T. Brereton, J.T.A. Dick, J. Drewitt, N.K. Dulvy, N.R. Dusic, R.P. Freckleton, K.J. Gaston, P.M. Gilder, R.E. Green, L. Heathwaite, S.M. Johnson, D.W. Macdonald, R. Mitchell, D. Osborn, R.P. Owen, J. Pretty, S.V. Prior, H. Prosser, A.S. Pullin, P. Rose, A. Stott, T. Tew, C.D. Thomas, D.B.A. Thompson, J.A. Vickery, M. Walker, C. Walmsley, S. Warrington, A.R. Watkinson, R.J. Williams, R. Woodroffe, and H.J. Woodroof.  2008.
Future novel threats and opportunities facing UK biodiversity identified by horizon scanning.
Journal of Applied Ecology 45:821-833.
doi: 10.1111/j.1365-2664.2008.01474.x

Williams, R.J. 2008.
Effects of network and dynamical model structure on species persistence in large model food webs.
Theoretical Ecology 1:1874-1746.
doi: 0.1007/s12080-008-0013-5

Williams, R.J., and N.D. Martinez. 2008.
Success and its limits among structural models of complex food webs.
Journal of Animal Ecology 77:512-519.

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2007

 

Krivov, S., R.J. Williams, and F. Villa.  2007.
GrOWL: A tool for visualizing and editing OWL ontologies.
Journal of Web Semantics 5:54-57.

Otto, S.B., B.C. Rall, and U. Brose. 2007. 
Allometric degree distributions facilitate food web stability.
Nature 450:1226-1230.

Srinivasan, U.T., J.A. Dunne, J. Harte, and N.D. Martinez.  2007.
Response of complex food webs to realistic extinction sequences.
Ecology 88:671-682.

Uchida S, B. Drossel, and U. Brose.  2007.
The structure of food webs with adaptive behaviour.
Ecological Modelling 206:263-276.

Williams, R.J., U. Brose, and N.D. Martinez.  2007.
Homage to Yodzis and Innes 1992: scaling up feeding-based population dynamics to complex ecological networks.
Pages 37-52 in From Energetics to Ecosystems: The Dynamics and Structure of Ecological Systems. N. Rooney, K.S. McCann, and D.L.G. Noakes, eds. Springer.

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2006

 

Beisner, B., J. Hovius, A Hayward, T.N. Romanuk, and J. Kolasa.   2006.
Environmental productivity and biodiversity effects on colonization: evidence for a sampling effect in rock pool invertebrate communities.
Biological Invasions 8:655-664.

Brose, U., T. Jonsson, E.L. Berlos, P. Warren, C. Banasek-Richter, L.-F. Bersier, J.L. Blanchard, T. Bery, S.R. Carpenter, M.-F. Cattin Blandenier, L. Cushing, H.A. Dawah, T. Dell, F. Edwards, S. Harper-Smith, U. Jacob, M.E. Ledger, N.D. Martinez, J. Memmott, K. Mintenbeck, J.K. Pinnegar, B.C. Rall, T.S. Rayner, D. C. Reuman, L. Ruess, W. Ulrich, R.J. Williams, G. Woodward, and J.E. Cohen.  2006.
Consumer-resource body size relationships in natural food webs.
Ecology 87:2411-2417.

Brose, U., R.J. Williams, and N.D. Martinez.  2006.
Allometric scaling enhances stability in complex food webs.
Ecology Letters 9:1228-1236.

Dunne, J.A.  2006.
The network structure of food webs.
Pages 27-86 in Ecological Networks: Linking Structure to Dynamics in Food Webs. M. Pascual and J.A. Dunne, eds. Oxford University Press.

Jung, B., I. Yoon, H. Lim, F.A. Ramirez-Weber, and D. Petkovic. 2006.
Annotizer: User-friendly WWW annotation system for collaboration in research and education environments.
IASTED Web Technologies, Applications, and Services, 113-118.

Krivov, S., F. Villa, R.J. Williams, and X. Wu.  2006.
On visualization of OWL ontologies.
Pages 205-221 in Semantic Web: Revolutionizing Knoweldge Discovery in the Life Sciences.  C.J.O. Baker and K. Heung, eds.  Springer.

Martinez, N.D.  2006.
Network evolution: exploring the change and adaptation of complex ecological systems over deep time.
Pages 287-301 in Ecological Networks: Linking Structure to Dynamics in Food Webs. M. Pascual and J.A. Dunne, eds. Oxford University Press.

Martinez, N.D., and L.J. Cushing.  2006.
Additional model complexity reduces fit to complex food-web structure.
Pages 87-89 in Ecological Networks: Linking Structure to Dynamics in Food Webs. M. Pascual and J.A. Dunne, eds. Oxford University Press.

Martinez, N.D., R.J. Williams, and J.A. Dunne.  2006.
Diversity, complexity, and persistence in large model ecosystems.
Pages 163-185 in Ecological Networks: Linking Structure to Dynamics in Food Webs. M. Pascual and J.A. Dunne, eds. Oxford University Press.
(previously, Santa Fe Institute Working Paper 04-07-022)

Memmott, J., D. Alonso, E.L. Berlow, A. Dobson, J.A. Dunne, R. Sole, and J. Wietz.  2006.
Biodiversity loss and ecological network structure.
Pages 325-347 in Ecological Networks: Linking Structure to Dynamics in Food Webs. M. Pascual and J.A. Dunne, eds. Oxford University Press.

Murakawa, J., I. Yoon, T. Hong, and E. Lank. 2006
Parts, image, and sketch based 3D modeling method.
Eurographics Workshop on Sketch-Based Interfaces and Modeling, 67-74.

Navarrete, S.A., and E.L. Berlow.  2006.
Variable interaction strengths stabilize marine community pattern.
Ecology Letters 9:526-536.

Pascual, M., and J.A. Dunne, eds.  2006.
Ecological Networks: Linking Structure to Dynamics in Food Webs.
Oxford University Press.

Pascual, M., and J.A. Dunne.  2006.
From small to large ecological networks in a dynamic world.
Pages 3-24 in Ecological Networks: Linking Structure to Dynamics in Food Webs.  M. Pascual and J.A. Dunne, eds. Oxford University Press.

Pascual, M., J.A. Dunne, and S.A. Levin.  2006.
Challenges for the future: integrating structure and dynamics.
Pages 351-371 in Ecological Networks: Linking Structure to Dynamics in Food Webs. M. Pascual and J.A. Dunne, eds. Oxford University Press.

Romanuk, T.N., B. Beisner, N.D. Martinez, and J. Kolasa.  2006.
Non-omnivorous generality promotes population stability.
Biology Letters 2:374-377.

Romanuk, T.N., L.J. Jackson, J.R. Rost, E. McCauley, and N.D. Martinez.  2006.
The structure of food webs along river networks.
Ecography 29:1-8.

Romanuk, T.N. and C.D. Levings.  2006.
Relationships between fish and supralittoral vegetation in nearshore marine habitats.
Aquatic Conservation: Marine and Freshwater Ecosystems 16:115-132.

Romanuk, T.N., R.J. Vogt, and J. Kolasa.  2006.
Eutrophication weakens the stabilizing effect of diversity on community and population variability.
Oikos 114:291-302.

Russell, R.B., S.A. Wood, G. Allison, and B.A. Menge. 2006.
Scale, environment, and trophic status: the context-dependency of community saturation in rocky intertidal communities.
American Naturalist 167: 158–170.

Schiel, D.R., S.A. Wood, R.A. Dunmore, and D.I. Taylor. 2006.
Sediment on rocky intertidal reefs: effects on early post-settlement stages of habitat-forming seaweeds.
Journal of Experimental Marine Biology and Ecology 331:158–172.

Schoch, G.C., B.A. Menge, G. Allison, M. Kavanaugh, S.A. Thompson, and S.A. Wood. 2006.
Fifteen degrees of separation: latitudinal gradients of rocky intertidal biota along the California Current.
Limnology and Oceanography 51:2564–2585.

Vogt, R., T.N. Romanuk, and J. Kolasa.  2006.
Species richness-variability relationships in multi-trophic aquatic microcosms.
Oikos 113:55-66.

Williams, R.J., N.D. Martinez, and J. Golbeck. 2006.
Ontologies for ecoinformatics.
Journal of Web Semantics 4:237-242.

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2005

 

Beisner, B.E., and T.N. Romanuk.  2005.
Diversity, productivity, and invasibility relationships in rock pool food webs.
Pages 3221-333 in Dynamic Food Webs: Multispecies Assemblages, Ecosystem Development and Environmental Change. P.C. de Ruiter, V. Wolters, and J.C. Moore, eds.  Academic Press.

Belgrano, A., U. Scharler, J.A. Dunne, and R.E. Ulanowicz, eds. 2005.
Aquatic Food Webs: An Ecosystem Approach.
Oxford University Press.

Bowers, S., D. Thau, R.J. Williams, and B. Ludaescher.  2005.
Data procurement for enabling scientific workflows: on exploring inter-ant parasitism.
Lecture Notes in Computer Science 3372:57-63. C. Bussler, V. Tannen, and I. Fundulaki, eds.  Springer-Verlag.

Brose, U., E.L. Berlow, T. Josson, C. Banasek-Richter, L.-F. Bersier, J.L. Blanchard, T. Brey, S.R. Carpenter, M.-F. Cattin Blandenier, J.E. Cohen, L. Cushing, H.A. Dawah, T. Dell, F. Edwards, S. Harper-Smith, U. Jacob, R.A. Jnapp, M.E. Ledger, J. Memmott, K. Tintenbeck, J.K. Pinnegar, B.C. Rall, T. Rayner, L. Ruess, W. Ulrich, P. Warren, R.J. Williams, G. Woodward, P. Yodzis, and N.D. Martinez.  2005. 
Body sizes of consumers and their resources.
Ecology 86:2545, Ecological Archives EO86-135.

Brose, U., E.L. Berlow, and N.D. Martinez.  2005.
Scaling up keystone effects from simple to complex ecological networks.
Ecology Letters 8:1317-1325.

Brose, U., E.L. Berlow, and N.D. Martinez.  2005.
From food webs to ecological networks: linking non-linear trophic interactions with nutrient competition.
Pages 27-36 in Dynamic Food Webs: Multispecies Assemblages, Ecosystem Development and Environmental Change. P.C. de Ruiter, V. Wolters, and J.C. Moore, eds.  Academic Press.

Brose, U., M. Pavao-Zuckerman, A. Eklof, J. Bengtsson, M. Berg, S.H. Cousins, C. Mulder, H.A. Verhoef, and V. Wolters.  2005.
Spatial aspects of food webs.
Pages 463-469 in Dynamic Food Webs: Multispecies Assemblages, Ecosystem Development and Environmental Change. P.C. de Ruiter, V. Wolters, and J.C. Moore, eds.  Academic Press.

Brose, U., and K. Tielborger.  2005.
Subtle differences in environemental stress along a flooding gradient affect the importance of inter-specific competition in an annual plant community.
Plant Ecology 178:51-59.

Chen, J., I. Yoon, and W. Bethel. 2005.
Interactive Internet delivery of scientific visualization via structure pre-rendered imagery.
SPIE 6061, 6061A.

Dell, A.I., G.D. Kokkoris, C. Banasek-Richter, L.-F. Bersier, J.A. Dunne, M. Kondoh, T.N. Romanuk, and N.D. Martinez.  2005.
How do complex food webs persist in nature?
Pages 425-436 in Dynamic Food Webs: Multispecies Assemblages, Ecosystem Development and Environmental Change. P.C. de Ruiter, V. Wolters, and J.C. Moore, eds.  Academic Press.

Dunne, J.A., U. Brose, R.J. Williams, and N.D. Martinez. 2005.
Modeling food-web dynamics: complexity-stability implications.
Pages 117-129 in Aquatic Food Webs: An Ecosystem Approach. A. Belgranno, U. Scharler, J.A. Dunne, and R.E. Ulanowicz, eds.  Oxford University Press.

Fuller, M., T.N. Romanuk, and J. Kolasa.  2005.
Effects of predation and variation in species relative abundance on the parameters of neutral models.
Community Ecology 6:229-240.

Green, J.L., A. Hastings, P. Arzberger, F. Ayala, K.L. Cottingham, K. Cuddington, F. Davis, J.A. Dunne, M.-J. Fortin, L Gerber, and M. Neubert. 2005.
Complexity in ecology and conservation: mathematical, statistical, and computational challenges
BioScience 55:501-510.

Harper-Smith, S., E.L. Berlow, R.A. Knapp, R.J. Williams, and N.D. Martinez.  2005.
Communicating ecology through food webs: visualizing and quantifying the effects of stocking alpine lakes with trout.
Pages 407-423 in Dynamic Food Webs: Multispecies Assemblages, Ecosystem Development and Environmental Change. P.C. de Ruiter, V. Wolters, and J.C. Moore, eds.  Academic Press.

Kang, E.-U., and I. Yoon. 2005.
Smooth scene transition for virtual tour on the World Wide Web.
IEEE International Conference of Computational Intelligence and Multimedia Applications, 219-224.

Kang, E.-U., and I. Yoon. 2005.
Scene transition based on image registration for Web-based virtual tour.
IASTED Internet and Multimedia Systems and Applications, 41-46.

Kolasa, J., and T.N. Romanuk.  2005.
Assembly of unequals in the unequal world of a rock pool metacommunity.
Pages 212-232 in Metacommunities: Spatial Dynamics and Ecological Communities. M. Holyoak, M.A. Leibold, and R.D. Holt, eds. University of Chacgo Press.

Romanuk, T.N., and J. Kolasa.  2005.
Resource limitation, biodiversity, and competitive effects interact to determine the invasibility of rock pool microcosms.
Biological Invasions 7:711-722.

Romanuk, T.N., and C.D. Levings.  2005.
Stable isotope analysis of trophic position and terrestrial vs marine carbon sources for juvenile Pacific salmonids in nearshore marine habitats.
Fisheries Management and Ecology 12:113-121.

Sabo, J.L., B.E. Beisner, E.L. Berlow, K. Cuddington, A. Hastings, M. Koen-Alonso, K. McCann, C. Melian, and J. Moore.  2005.
Population dynamics of food web properties with minimal detail and resolution.
Pages 437-450 in Dynamic Food Webs: Multispecies Assemblages, Ecosystem Development and Environmental Change. P.C. de Ruiter, V. Wolters, and J.C. Moore, eds.  Academic Press.

Shimoide, A., L. Link, T.-L. Hong, S. Aragon, and I. Yoon. 2005.
Easy and effective computing environment on the WWW.
International Conferences on Internet Computing, 94-98

Shimoide, A., I Yoon, M. Fuse, H. Beal, and R. Singh. 2005.
Automated behavioral phenotype detection and analysis.
IEEE Canadian Conference on Computer and Robot Vision, 370-377.

Yoon, I., S. Yoon, R.J. Williams, N.D. Martinez, and J.A. Dunne.  2005.
Interactive 3D visualization of highly connected ecological networks on the WWW.
ACM Symposium on Applied Computing (SAC 2005), Multimedia and Visualization Section 1207-1217.

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2004

 

Berlow, E.L., A.M. Neutel, J.E. Cohen, P.C. de Ruiter, B. Ebenman, M. Emmerson, J.W. Fox, V.A.A. Jansen, J.I. Jones, G.D. Kokkoris, D.O. Logofet, A.J. McKane, J. Montoya, and O.L. Petchey. 2004.
Interaction strengths in food webs: issues and opportunities.
Journal of Animal Ecology 73: 585-598.

Brose, U., and N.D. Martinez. 2004.
Estimating the richness of species with variable mobility.
Oikos 105:292-300.

Brose, U., A. Ostling, K. Harison, and N.D. Martinez. 2004.
Unified spatial scaling of species and their trophic interactions.
Nature 428:167-171.

Dunne, J.A., S.R. Saleska, M.L. Fischer, and J. Harte. 2004.
Integrating experimental and gradient methods in ecological climate change research.
Ecology 85:904-916.

Dunne, J.A., R.J. Williams, and N.D. Martinez. 2004.
Network structure and robustness of marine food webs.
Marine Ecology Progress Series 273:291-302.

Martinez, N.D., and J.A. Dunne.  2004.
Letter to editor in response to letter by Robert Paine on the article "Virtual Ecosystems."
Conservation in Practice Winter Issue 2003-2004.

Moore, J.C., E.L. Berlow, D.C. Coleman, P.C. de Ruiter, Q. Dong, A. Hastings, N. Collins Johnson, K.S. McCann, K. Melville, P.J. Morin, K. Nadelhoffer, A.D. Rosemond, D.M. Post, J.L. Sabo, K.M. Scow, M.J. Vanni, and D.H. Wall. 2004.
Detritus, trophic dynamics, and biodiversity.
Ecology Letters 7: 584-600.

Romanuk, T.N., and J. Kolasa.  2004.
Population variability is lower in diverse rock pools when the obscuring effects of local processes are removed.
Ecoscience 11:455-462.

Srivastava, D.S., J. Kolasa, J. Bengtsson, A. Gonzales, S.P. Lawler, T.E. Miller, P. Munguia, T.N. Romanuk, D.C. Schneider, and M.K. Trzcinski.  2004.
Are natural microcosms useful model systems for ecology?
Trends in Ecology and Evolution 19:379-384.

Starzomski, B.M., B.J. Cardinale, J.A. Dunne, M.J. Hillery, C.A. Holt, M.A. Krawchuk, M. Lage, S. McMahon, and M.C. Melnychuk. 2004.
Contemporary visions of progress in ecology, and thoughts for the future.
Ecology and Society 9:14.

Tan, E., and T.N. Romanuk.  2004.
Species coexistence in a food web with intraguild predation.
Undergraduate Research in Behavior, Ecology and Evolution 1:4.

Tews, J., U. Brose, V. Grimm, K. Tielbörger, M.C. Wichmann, M. Schwager, and F. Jeltsch.  2004
Animal species diversity driven by habitat heterogeneity of the vegetation: the importance of keystone structures.
Journal of Biogeography31:79-92

Williams, R.J., and N.D. Martinez. 2004.
Stabilization of chaotic and non-permanent food-web dynamics.
European Physics Journal B 38:297-303.

Williams, R.J., and N.D. Martinez. 2004.
Limits to trophic levels and omnivory in complex food webs: theory and data.
The American Naturalist 163:458-468.

Yoon, I., R.J. Williams, E. Levine, S. Yoon, J.A. Dunne, and N.D. Martinez. 2004.
Webs on the Web (WoW): 3D visualization of ecological networks on the WWW for collaborative research and education.
Proceedings of the IS&T/SPIE Symposium on Electronic Imaging, Visualization and Data Analysis Section 5295:124-132.

Yoon, S., I. Yoon, R.J. Williams, N.D. Martinez, and J.A. Dunne.  2004.
3D visualization and analysis of ecological networks. 
Proceedings of the Seventh LASTED International Conference on Computer Graphics and Imaging 224-229.

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2003

 

Berlow, E.L., C.M. D'Antonio, and H. Swartz. 2003.
Response of herbs to shrub removal across natural and experimental variation in soil moisture.
Ecological Applications 13: 1375-1387.

Brose, U. 2003.
Bottom-up control of carabid beetle communities in early successional wetlands: mediated by vegetation structure or plant diversity?
Oecologia 135: 407-413.

Brose, U. 2003.
Regional diversity of temporary wetland carabid beetle communities: a matter of landscape features or cultivation intensity?
Agriculture Ecosystems and Environment 98:163-167.

Brose, U. 2003.
Island biogeography of temporary wetland's carabid beetle communities.
Journal of Biogeography 30:879-888.

Brose, U., N.D. Martinez, and R.J. Williams. 2003.
Estimating species richness: sensitivity to sample coverage and insensitivity to spatial patterns.
Ecology 84:2364-2377.

Brose, U., R.J. Williams, and N.D. Martinez. 2003.
Comment on "Foraging adaptation and the relationship between food-web complexity and stability."
Science 301:918b-918c.

Dunne, J.A., J. Harte, and K.J. Taylor. 2003.
Subalpine meadow flowering phenology responses to climate change: integrating experimental and gradient methods.
Ecological Monographs 73:69-86.

Romanuk, T.N., and C.D. Levings. 2003.
Associations between arthropods and supralittoral vegetation: dependence of terrestrial and aquatic taxa on vegetation.
Environmental Entomology 32:1343-1353.

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2002

 

Bauer, K., E.L. Berlow, and C.M. D'Antonio. 2002.
The relationship between climate and Rothrock sagebrush colonization patterns.
Journal of Range Management 55:620-625.

Berlow, E.L., C.M. D'Antonio, and S.A. Reynolds. 2002.
Shrub expansion in montane meadows: the interaction of local-scale disturbance and site aridity.
Ecological Applications 12:1103-1118.

Brose, U. 2002.
Estimating species richness of pitfall catches by non-parametric estimators.
Pedobiologia 46:101-107.

Dunne, J.A., R.J. Williams, and N.D. Martinez. 2002.
Food-web structure and network theory: the role of connectance and size.
Proceedings of the National Academy of Sciences USA 99:12917-12922.
(previously, Santa Fe Institute Working Paper 02-03-010)

Dunne, J.A., R.J. Williams, and N.D. Martinez. 2002
Network structure and biodiversity loss in food webs: robustness increases with connectance.>
Ecology Letters 5:558-567.
(previously, Santa Fe Institue Working Paper 02-03-013)

Romanuk, T.N., and J. Kolasa. 2002.
Environmental variability alters the relationship between species richness and community variability in natural rock pool microcosms.
Ecoscience 9:55-62.

Romanuk, T.N., and J. Kolasa. 2002.
Abundance and species richness in natural aquatic habitats: a test and a refinement of the Niche-Limitation Hypothesis.
Community Ecology 3:87-94.

Saleska, S.R., M.R. Shaw, M.L. Fischer, J.A. Dunne, C.J. Still, M.L. Holman, J. Harte. 2002.
Plant community composition mediates both large transient decline and predicted long-term recovery of soil carbon under climate warming.
Global Biogeochemical Cycles 16:1055.

Williams, R.J., E.L. Berlow, J.A. Dunne, A.-L. Barabási, and N.D. Martinez. 2002.
Two degrees of separation in complex food webs.
Proceedings of the National Academy of Sciences USA 99:12913-12916.

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2001

 

Brose, U. 2001.
Relative importance of isolation, area and habitat heterogeneity for vascular plant species richness of temporary wetlands in East-German farmland.
Ecography 24:722-730.

Dunne, J.A., and J. Harte. 2001.
Greenhouse effect.
Pages 277-293 in Encyclopedia of Biodiversity, Volume III. S. Levin, ed. Academic Press.

Romanuk, T.N., and J. Kolasa. 2001.
Simplifying the complexity of temporal diversity dynamics: a differentiation approach.
Ecoscience 8:259-263.

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2000

 

Memmott, J., N.D. Martinez, and J.E. Cohen. 2000.
Predators, parasites and pathogens: species richness, trophic generality, and body sizes in a natural food web.
Journal of Animal Ecology 69:1-15.

Sala, O.E., F.S. Chapin III, J.J. Armesto, E. Berlow, J. Bloomfield, R. Dirzo, E. Huber-Sanwald, L.F. Huenneke, R.B. Jackson, A. Kinzig, R. Leemans, D.M. Lodge, H.A. Mooney, M. Oesterheld, N.L. Poff, M.T. Sykes, B.H. Walker, M. Walker, and D.H. Wall.  2000.
Global biodiversity scenarios for the year 2100.
Science 287:1771-1774.

Willliams, R.J., and N.D. Martinez. 2000.
Simple rules yield complex food webs.
Nature 404:180-183.

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1999

 

Berlow, E.L.  1999.
Strong effects of weak interactions in ecological communities.
Nature 398:300-334.

Berlow, E.L., S.A. Navarrete, C.J. Briggs, M.E. Power, and B.A. Menge. 1999.
Quantifying variation in the strengths of species interactions.
Ecology 80:2206-2224.

Dunne, J.A., and V.T. Parker. 1999.
Species-mediated soil moisture availability and patchy establishment of Pseudotsuga menziesii in chaparral.
Oecologia 119:36-45.

Holt, R.D., J.H. Lawton, G.A. Polis, and N.D. Martinez. 1999.
'Trophic rank and the species-area relation.
Ecology 80:1495-1504.

Martinez, N.D., B.A. Hawkins, H.A. Dawah, and B. Feifarek. 1999.
Effects of sample effort ond characterization of food-web structure.
Ecology 80:1044-1055.

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1998

 

Martinez, N.D., and J.A. Dunne. 1998.
Time, space, and beyond: scale issues in food-web research.
Pages 207-226 in Ecological Scale: Theory and Applications. D. Peterson and V.T. Parker, eds. Columbia University Press.

 

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1997

 

Berlow, E.L. 1997.
From canalization to contingency: historical effects in a successional rocky intertidal community.
Ecological Monographs 67:435-460.

Berlow, E.L., and S.A. Navarrete. 1997.
Spatial and temporal variation in rocky intertidal community organization: lessons from repeating field experiments.
Journal of Experimental Marine Biology and Ecology 214:195-229.

Hawkins B.A., N.D. Martinez, and F. Gilbert. 1997.
Source food webs as estimators of community web structure.
Acta Oecologica 18:575-586.

 

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1996

 

Martinez, N.D. 1996.
Defining and measuring functional aspects of biodiversity.
Pages 207-226 in Biodiversity: A Biology of Numbers and Difference. K.J. Gaston, ed. Blackwell Scientific.

Bengtsson, J., and N.D. Martinez. 1996.
Cause and effect in food webs: do generalities exist?
Pages 179-184 in Food Webs: Integration of Patterns and Dynamics. G.A. Polis and K.O. Winemiller, eds. Chapman and Hall.

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1995

 

Martinez, N.D. 1995.
Unifying ecological subdisciplines with ecosystem food webs.
Pages 166-175 in Linking Species and Ecosystems. 1993 Cary Conference Proceedings. C.G. Jones and J.H. Lawton, eds. Chapman and Hall.

Martinez, N.D., and J.H. Lawton. 1995.
Scale and food-web structure-from local to global.
Oikos 73:148-154.

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1994

 

Martinez, N.D. 1994.
Scale-dependent constraints on food-web structure.
The American Naturalist 144:935-953.

Menge, B.A., E.L. Berlow, C.A. Blanchette, S.A. Navarrete, and S.B. Yamada. 1994.
The keystone species concept: variation in interaction strength in a rocky intertidal habitat.>
Ecological Monographs 64: 249-286.

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1993

 

Cohen, J.E., R.A. Beaver, S.H. Cousins, D.L. DeAngelis, L. Goldwasser, K.L. Heong, R.D. Holt, A.J. Kohn, J.H. Lawton, N.D. Martinez, R. O'Malley, L.M. Page, B.C. Patten, S.L. Pimm, G.A. Polis, M. Rejmynek, T.W. Schoener, K. Schoenly, W.G. Sprules, J.M. Teal, R.E. Ulanowicz, P.H. Warren, H.M. Wilbur, and P. Yodzis. 1993.
Improving food webs.
Ecology 74:252-258.

Martinez, N.D. 1993
Effects of resolution on food web structure.
Oikos 66:403-412.

Martinez, N.D. 1993.
Effect of scale on food web structure.
Science 260:242-243.

Martinez, N.D. 1993.
Effect of scale on food web structure. (Retraction of editorial error)
Science 260:1412.
"In the technical comment 'Effect of scale on food web structure' by Dr. Neo Martinez (9 Apr., p 242), the second sentence of the fourth paragraph, which read '(We assume that the simple linear regressions in the report by Havens are valid.)', is incorrect and should not have appeared."

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1992

 

Martinez, N.D. 1992.
Constant connectance in community food webs.
The American Naturalist 139:1208-1218.

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1991

 

Martinez, N.D. 1991.
Artifacts or attributes? Effects of resolution on the Little Rock Lake food web.
Ecological Monographs 61:367-392.

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1990

 

Martinez, N.D. 1990.
New wave ecology.   (Symposium review)
Bulletin of the Ecological Society of America 71:130-132.

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